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Item CA006002: Comparing DNA sequences of new strains of the Chikungunya virus to the original strain can be used to determine the DNA sequence of their most recent common ancestor.

Chikungunya is a disease that is transmitted to humans by infected mosquitoes. The disease, which causes fevers, rashes, and joint pain for years after infection, is caused by the Chikungunya virus.

In 2006, a new outbreak of Chikungunya infected many more people than usual. To understand why the disease was spreading, scientists collected samples of the virus from people infected in 2006 and found that three new strains of the virus had developed. They labeled these virus strains X, Y, and Z.  Then they compared the DNA sequences of these three new strains to the 2005 virus. They assumed that these new 2006 strains were all descended from the 2005 virus and were caused by a series of mutations in the DNA sequence of the 2005 virus. (The DNA sequence of each strain is represented by the letters ATGC.)

Key differences between the 2005 virus and the three new 2006 strains that the scientists found are highlighted below. For the following question, assume that each mutation happened only once and then was inherited by all descendants of the strain in which it occurred. You should also assume that once a mutation occurred in the DNA sequence, it did not mutate back to the original sequence.

Virus Strain

DNA Sequence

2005 Virus

CGTTTGGCATCGC

2006 Virus Strain X

TGAATAACATTGC

2006 Virus Strain Y

CGTCTGGCATTGC

2006 Virus Strain Z

CATTTAACACTGT

 
Which sequence likely represents the most recent common ancestor of Virus X and Virus Z?
 
  1. TGAATAACATTGC
  2. CGTCTGGCATTGC
  3. CATTTAACACTGT
  4. CGTTTAACATTGC

Pre-Test

Distribution of responses (prior to studying evolution in high school)
Answer Choice
Overall
Grades
Gender
Primary Language
 
n = 558
6–8
n = 25
9–12
n = 498
Male
n = 243
Female
n = 274
English
n = 502
Other
n = 19
A. TGAATAACATTGC 22% 12% 22% 25% 18% 22% 21%
B. CGTCTGGCATTGC 18% 24% 18% 20% 16% 19% 11%
C. CATTTAACACTGT 23% 28% 23% 20% 27% 23% 11%
D. CGTTTAACATTGC 36% 36% 37% 35% 38% 36% 58%

Post-Test (Control)

Distribution of responses (following typical high school instruction on evolution)
Answer Choice
Overall
Grades
Gender
Primary Language
 
n = 294
6–8
n = 23
9–12
n = 247
Male
n = 109
Female
n = 171
English
n = 264
Other
n = 9
A. TGAATAACATTGC 20% 22% 20% 17% 22% 21% 11%
B. CGTCTGGCATTGC 17% 17% 17% 21% 15% 16% 44%
C. CATTTAACACTGT 19% 22% 19% 21% 18% 19% 0%
D. CGTTTAACATTGC 45% 39% 44% 40% 45% 44% 44%

Post-Test (Treatment)

Distribution of responses (following completion of an evolution curriculum module)
Answer Choice
Overall
Grades
Gender
Primary Language
 
n = 281
6–8
n = 3
9–12
n = 257
Male
n = 132
Female
n = 140
English
n = 254
Other
n = 11
A. TGAATAACATTGC 18% 33% 18% 20% 17% 18% 18%
B. CGTCTGGCATTGC 15% 67% 14% 13% 17% 16% 18%
C. CATTTAACACTGT 21% 0% 22% 23% 21% 21% 36%
D. CGTTTAACATTGC 46% 0% 46% 44% 45% 45% 27%